The current methods distribution of source code, sample inputs, and sample outputs is just under 10.7 GiB compressed. It has been split into six pieces that must be downloaded separately, concatenated, un-gzip’d, and un-tar’d (see sample command below). Having ~24 GiB (or ~26 GB) of free space should be sufficient for expansion (but you will need much more free space for, e.g., tree building). The filesystem you expand onto is assumed to support symbolic links.
| CokusAlignment-CokusCalling-DEVELOPMENT-RELEASE-1-20080217.tar.gz-SPLITpart1of6.bin | 2,000,000,000 bytes with MD5 27d7adf89eab6cd9fd556667aab723bf | |
| CokusAlignment-CokusCalling-DEVELOPMENT-RELEASE-1-20080217.tar.gz-SPLITpart2of6.bin | 2,000,000,000 bytes with MD5 356ec34196eafa3fed89b55fb66bc3b5 | |
| CokusAlignment-CokusCalling-DEVELOPMENT-RELEASE-1-20080217.tar.gz-SPLITpart3of6.bin | 2,000,000,000 bytes with MD5 ec819841395c29a69e884f5b695b7d2f | |
| CokusAlignment-CokusCalling-DEVELOPMENT-RELEASE-1-20080217.tar.gz-SPLITpart4of6.bin | 2,000,000,000 bytes with MD5 bf4ebc30c9eb1bbef0aae7dc8ffe1883 | |
| CokusAlignment-CokusCalling-DEVELOPMENT-RELEASE-1-20080217.tar.gz-SPLITpart5of6.bin | 2,000,000,000 bytes with MD5 107f9de8ec0bb9ac785fe7fc63183154 | |
| CokusAlignment-CokusCalling-DEVELOPMENT-RELEASE-1-20080217.tar.gz-SPLITpart6of6.bin | 1,411,729,729 bytes with MD5 53b75d8161beccaf33f4397778131710 |
Verification of byte lengths and MD5 checksums of retrieved parts is highly recommended.
For Mac OS X, if you place the parts on your Desktop, then in Terminal.app the following command should effect expansion: ‘cd ~/Desktop && /bin/cat CokusAlignment-CokusCalling-DEVELOPMENT-RELEASE-1-20080217.tar.gz-SPLITpart{1,2,3,4,5,6}of6.bin | /usr/bin/gzcat | /usr/bin/tar xvf -’. Type everything between (but not including) the surrounding single quotes exactly as-is into a single line and then type Return; you should end up with a ‘CokusAlignment-CokusCalling-DEVELOPMENT-RELEASE-1-20080217’ directory tree in your Desktop.
If you are on Windows, you might find the Cygwin project helpful as then you should be able to use a similar command inside a Cygwin bash shell. If you are on Linux, then a similar command to that above should also work.